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Installing MUSCLE · Making an alignment (MSA) · Creating a tree (N-J or UPGMA) · License: MUSCLE is public domain. MUSCLE papers, how to cite. Papers and citing MUSCLE Popular options and features. Alignment output formats · Adding a sequence to an existing MSA · Profile-profile alignment (aligning two MSAs)
This item is bundled with the Muscle Manual Flash Cards. For more information, visit the product page. The Clinical Consultant Muscle Manual is designed as a quick reference guide for health care students, therapist, practitioners, doctors & instructors, and as a companion to the Physical Assessment Manual & the
If muscle completes successfully, it will create a file seqs.afa containing the alignment. By default, output is created in "aligned FASTA" format (hence the .afa extension). This is just like regular FASTA except that gaps are added in order to align the sequences. This is a nice format for computers but not very readable for
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March 2018