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15 Nov 2010 Abstract. Background: The availability of larger-scale SNP data sets in the chicken genome allows to achieve a higher resolution of the pattern of linkage disequilibrium (LD). In this study, 36 k and 57 k genotypes from two independent genotyping chips were used to systematically characterize
with cell proliferation, chromosome and Golgi organization, spermatogenesis, and muscle contraction. Conclusions: The large catalogue of InDels presented in this study along with their associated information such as functional annotation, estimated allele frequency, etc. are expected to serve as a rich resource for
cific gene promoters, but not at muscle-specific gene promoters. Likewise, we predicted folds and 28 contigs required manual breaks due to de novo assem- This 'Synbreed. Chicken Diversity Panel (SCDP)', which encompasses more than. 3200 individuals of 175 populations, was genotyped with the 580K.
21 Apr 2017 A collection of functions required for genomic prediction which were developed within the Synbreed project for synergistic plant and animal breeding (<www.synbreed.tum.de>). This covers data processing, data visualization, and analysis. All functions are embedded within the framework of a single,
16 Apr 2014 The non-commercial fancy breeds consist of 26 individuals from 14 fancy breeds which were sampled within Synbreed project. .. PRKAB2, POMC and TGFb2 which are associated with live-weight, carcass-weight, leg-muscle-weight, abdomen-fat-weight and feed conversion, were also located in the
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'synbreed'. 'synbreed' is an open-source R package for deriving genome-based predictions from high-throughput genotyping and large-scale phenotyping data. It contains a comprehensive collection of functions required to fit and crossvalidate genomic predictions models. Publication in "Bioinformatics". Download from
29 Nov 2012 We extended the window to its decaying domains in both directions up to 700 kb to find the biologically most interesting candidate gene in this region. In general the annotation list (Table S1) is enriched with genes of biological interest involved in carbohydrate metabolism pathways, muscle-skeletal
Package 'synbreed'. April 21, 2017. Type Package. Title Framework for the Analysis of Genomic Prediction Data using R. Version 0.12-6. Date 2017-04-21. Author Hans-Juergen Auinger, Valentin Wimmer, Theresa Albrecht, Chris-Carolin Schoen with con- tributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Chris-.
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